Prof. Ofer Shir

Ofer Shir
Associate Professor of Computer Science
Principal Investigator
Research Group Leader
PhD
Phone
972-4-6489923

Lab Website

Full CV (PDF)
Research Interests:

Computational Intelligence, Experimental Optimization, Statistical Learning, Theory of Randomized Search Heuristics, Quantum ML

Quote
You are the outcome of 3.8 billion years of evolutionary success. Act like it.

The advent of modern laboratory and field experiments, as well as of computerized systems, enables researchers to control experiments and analyze their big-data in high-speed rates. Yet, algorithmic design of intelligent experiments for optimization and learning of prescribed objectives may constitute the next level. Very little is known today about the general usefulness of optimization heuristics and statistical learning methods in laboratory experiments, about their strengths and weaknesses when compared to traditional Design-of-Experiments approaches, or about any kind of guidelines which approach to prefer, depending upon the dimensionality of the search-space, the levels of uncertainty and the number of available trials.

We are interested in learning and optimization questions related to systems within the Natural Sciences. In particular, Operational Research and Machine Learning aspects of experimental domains, that is, practical physical- and life-sciences problems whose computerized models are unavailable or too expensive to be executed, and thus necessitate real-world experiments toward the end of their global optimization. Our research interests encompass in general the following topics:

  • AI-Driven Scientific Research and Algorithmically-Guided Experimentation
  • Artificial General Intelligence, Deep Learning, Self-Supervised Learning
  • Combinatorial Optimization (White/Grey/Black-box, including physical systems in the lab)
  • Quantum Optimization
     

Our current activities include Experimental Combinatorial Optimization (with Dr. Dan Gamrasni and Dr. Or Shahar), Mixed-Integer Quadratic Models (with Prof. Michael Emmerich), and Quantum Optimization (with Dr. Alberto Moraglio).

CV

Education

2008-2010 Postdoctoral Research Associate, Princeton University, USA
2008 Ph.D., Computer Science, Leiden University, The Netherlands
2004 M.Sc., Computer Science, Leiden University, The Netherlands
2003 B.Sc., Physics and Computer Science, The Hebrew University of Jerusalem, Israel

Academic and research positions

2024 University of Jyväskylä, Adjunct Professor, The Jyväskylä Summer School, Finland 
2022-2023 Visiting Associate Professor, Faculty of Mathematics, Technion - Israel Institute of Technology
2020- Associate Professor, Computer Science Department, Tel-Hai College
2013- Principal Investigator, MIGAL-Galilee Research Institute

Previously

2019-2022 Head, Computer Science Department, Tel-Hai College
2012-2020 Lecturer and Senior Lecturer, Computer Science Department, Tel-Hai College
2010-2013, Research Staff Member, IBM-Research

Funding

2025-2028, “Benchmarking Quantum Computers on Combinatorial Optimization Problems: A Pilot Study”, UK-IL MOIST/British-Council, jointly with Dr. Alberto Moraglio (PI@UK).
2024-2027, "Multi-objective combinatorial optimization of postharvest protocols using substances of natural origin”, MOIST, with Dr. Dan Gamrasni.
2023-2026, “An innovative AI-driven approach for the development of environmentally-friendly postharvest volatile fungicides”, MOISTled by Dr. Dan Gamrasni.
2022-2025, “Innovative AI-driven approach for the development of postharvest protocols under extreme climatic conditions”, MOAG, led by Dr. Dan Gamrasni.

Scientific Publications

Learning the Complete-Basis-Functions Parameterization for the Optimization of Dynamic Molecular Alignment by ES.

Shir, O.M., Kok, J.N., Bäck, T., Vrakking, M.J.
In Intelligent Data Engineering and Automated Learning ? IDEAL 2006. IDEAL 2006. Lecture Notes in Computer Science ,2006, Corchado E., Yin H., Botti V., Fyfe C. Ed. ,Springer Berlin, Heidelberg, Pages 410?418
2006

Dynamic Niching in Evolution Strategies with Covariance Matrix Adaptation.

Shir, O.M., Bäck, T.
In Proceedings of the 2005 Congress on Evolutionary Computation CEC-2005 ,2005, IEEE Ed. ,IEEE Press Piscataway, NJ, USA, Pages 2584?2591
2005

Niching in Evolution Strategies

Shir, O.M., Bäck, T.
In Proceedings of the Genetic and Evolutionary Computation Conference, GECCO-2005, ,2005, ACM Ed. ,ACM Press New York, NY, USA, Pages 915?916
2005

Performance Analysis of Derandomized Evolution Strategies in Quantum Control Experiments.

Shir, O.M., Roslund, J., Bäck, T., Rabitz, H.

Review of "Christian Blum and Günther R. Raidl: Hybrid metaheuristics ? powerful tools for optimization"

Shir, O.M.
Genetic Programming and Evolvable Machines Volume 19 Issue 1-2 Pages 309-311