Dr. Ailie Marx : Structural Biology
A dataset of alternately located segments in protein crystal structures
Rosenberg, A., Marx, A. and Bronstein, A.
2024
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Scientific Data 11
Seeing Double: Molecular dynamics simulations reveal the stability of certain alternate protein conformations in crystal structures
Aviv A Rosenberg, Sanketh Vedula, Alex M Bronstein, Ailie Marx
2024
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bioRxiv
A dataset of alternately located segments in protein crystal structures
Aviv A Rosenberg, Ailie Marx, Alexander M Bronstein
2024
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Scientific Data
Water stabilizes an alternate turn conformation in horse heart myoglobin
Alex Bronstein, Ailie Marx
2023
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Scientific reports
An amino-domino model described by a cross-peptide-bond Ramachandran plot defines amino acid pairs as local structural units
Aviv A Rosenberg, Nitsan Yehishalom, Ailie Marx, Alex M Bronstein
2023
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Proceedings of the National Academy of Sciences
Humans as intuitive classifiers
Ido Erev, Ailie Marx
2023
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Frontiers in Psychology
Machine learning approaches demonstrate that protein structures carry information about their genetic coding
Linor Ackerman-Schraier, Aviv A Rosenberg, Ailie Marx, Alex M Bronstein
2022
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Scientific Reports
Defining amino acid pairs as structural units suggests mutation sensitivity to adjacent residues
Aviv A Rosenberg, Nitsan Yehishalom, Ailie Marx, Alex Bronstein
2022
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bioRxiv
Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon
Aviv A Rosenberg, Ailie Marx, Alex M Bronstein
2022
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Nature communications
Recording Silence–Accurate Annotation of the Genetic Sequence Is Required to Better Understand How Synonymous Coding Affects Protein Structure and Disease
Aviv A Rosenberg, Alex M Bronstein, Ailie Marx
2022
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Single Nucleotide Polymorphisms: Human Variation and a Coming Revolution in Biology and Medicine
Pausing kinetics dominates strand-displacement polymerization by reverse transcriptase
Omri Malik, Hadeel Khamis, Sergei Rudnizky, Ailie Marx, Ariel Kaplan
2017
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Nucleic acids research
The preserved HTH-docking cleft of HIV-1 integrase is functionally critical
Meytal Galilee, Elena Britan-Rosich, Sarah L Griner, Serdar Uysal, Viola Baumgärtel, Don C Lamb, Anthony A Kossiakoff, Moshe Kotler, Robert M Stroud, Ailie Marx, Akram Alian
2016
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Structure
Structure of FIV capsid C-terminal domain demonstrates lentiviral evasion of genetic fragility by coevolved substitutions
Aya Khwaja, Meytal Galilee, Ailie Marx, Akram Alian
2016
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Scientific Reports
Zinc enhancement of cytidine deaminase activity highlights a potential allosteric role of loop-3 in regulating APOBEC3 enzymes
Ailie Marx, Meytal Galilee, Akram Alian
2015
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Scientific reports
The first crystal structure of a dTTP-bound deoxycytidylate deaminase validates and details the allosteric-inhibitor binding site
Ailie Marx, Akram Alian
2015
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Journal of Biological Chemistry
Rerouting Resistance: Escaping Restriction Using Alternative Cellular Pathways
Ailie Marx, Akram Alian
2015
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Trends in microbiology
A novel open-barrel structure of octameric translin reveals a potential RNA entryway
Elad Eliahoo, Ailie Marx, Haim Manor, Akram Alian
2015
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Journal of Molecular Biology
The road less traveled: HIV's use of alternative routes through cellular pathways
Ailie Marx, Akram Alian
2015
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Journal of virology
Strand-displacement polymerization by Reverse Transcriptase: lessons from single molecule studies
O Malik, S Rudnizky, A Marx, A Kaplan
2015
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EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
Piecing together the phycobilisome
Ailie Marx, Liron David, Noam Adir
2014
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The Structural Basis of Biological Energy Generation
Structural characteristics that stabilize or destabilize different assembly levels of phycocyanin by urea
Ailie Marx, Noam Adir
2014
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Photosynthesis research
Allophycocyanin and phycocyanin crystal structures reveal facets of phycobilisome assembly
Ailie Marx, Noam Adir
2013
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Biochimica et Biophysica Acta (BBA)-Bioenergetics
Crystallization of a giant photosynthetic antenna complex–the phycobilisome
Liron David, Xianglu Li, Ailie Marx, Robert Blankenship, Noam Adir
2011
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Acta Cryst
Elucidation of Phycobilisome Functionalities Using High Resolution Structures of Phycobiliproteins
Ailie Marx
2011
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Technion-Israel Institute of Technology, Faculty of Chemistry
High-Resolution Crystal Structures of Trimeric and Rod Phycocyanin
Liron David, Ailie Marx, Noam Adir
2011
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Journal of molecular biology