Microbiome Bioinformatics
- Microbiome Bioinformatics
- Microbiome Bioinformatics
Dr. Itai Sharon
Genomic island variability facilitates Prochlorococcus-virus coexistence
Avrani, S., Wurtzel, O., Sharon, I., Sorek, R., Lindell, D
Nature 2011 Volume 474 Pages 604-608
2011
Microbial rhodopsins on leaf surfaces of terrestrial plants
Atamna-Ismaeel, N., Finkel, O.M., Glaser, F., Sharon, I., Schneider, R., Post, A.F., Spudich, J.L., von Mering, C., Vorholt, J.A., Iluz, D., Béjà, O., Belkin, S
Environ Microbiol 2011 Volume 14 Issue 1 Pages 140-146
2011
Reconstructing a puzzle: Existence of cyanophages containing both photosystem-I & photosystem- II gene-suites inferred from oceanic metagenomic datasets
Alperovitch A., Sharon I., Rohwer F., Aro E.M., Milo R., Nelson N., Béjà, O.
Environ Microbiol. 2011 Volume 13 Pages 24-32
2011
Comparative community genomics in the Dead Sea, an increasingly extreme environment
Bodaker I., Sharon I., Suzuki M.T., Feingersch R., Shmoish M., Andreishcheva E., Sogin M.L., Rosenber M., Maguire M.E., Belkin S., Oren O., Béjà O.
ISME J 2010 Volume 4 Issue 3 Pages 399- 407
2010
Pathway-based functional analysis of metagenomes
Sharon I., Bercovici S., Pinter R., Shlomi T.
J Comput Biol 2010 Volume 18 Issue 3 Pages 495-505
2010
Photosystem I gene cassettes are present in marine virus genomes
Sharon I., Alperovitch A., Rohwer F., Haynes M., Glaser F., Atamna-Ismaeel N., Pinter R.Y., Partensky F., Koonin E.V., Wolf Y.I., Nelson N., Béjà O.
Nature 2009 Volume 461 Pages 258-262
2009
Prediction of protein-protein Interactions: a study on the co-evolution model.
Sharon, I., Davis, J.V. and Yona, G.
In Methods Mol Biol: Computational Systems Biology ,2009, Ed. ,Springer-Verlag , Pages 61-88
2009
A statistical framework for the functional analysis of metagenomes
Sharon, I., Pati, A., Markowitz, V.M., Pinter, R.Y.
Computational Molecular Biology Proceedings of 13th Annual International Conference on Research in (RECOMB), LNCS 2009 Volume 5541 Pages 496-511
2009
Microbial community genomics in eastern Mediterranean Sea surface waters
Feingersch, R., Suzuki, M.T., Shmoish, M., Sharon, I., Sabehi, G., Partensky, F., Béjà, O.
ISME J. 2009 Volume 4 Issue 1 Pages 78-87
2009
Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes
Loy, A., Duller, S., Baranyi, C., Mußmann, M., Ott, J., Sharon, I., Béjà, O., Le Paslier, D., Dahl, C., Wagner, M.
Environ Microbiol. 2008 Volume 11 Issue 2 Pages 289-299
2008
The tryptophan pathway genes of the Sargasso Sea metagenome: new operon structure
Kagan, J., Sharon, I., Béjà, O., Kuhn, J.
Genome Biol 2008 Volume 9 Issue 1 Pages R20
2008
Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems
Atamna-Ismaeel, N., Sabehi, G., Sharon, I., Witzel, K-P., Labrenz, M., Jurgens, K., Barkay, T., Stomp, M., Huisman, J., Béjà, O.
ISME J 2008 Volume 2 Issue 6 Pages 656-662
2008
Viral photosynthetic reaction center genes and transcripts in the marine environment
Sharon, I.*, Tzahor, S.*, Williamson, S.*, Shmoish, M., Man-Aharonovich, D., Rusch, D.B., Yooseph, S., Zeidner, G., Golden, S.S., Mackey, S.R., Adir, N., Weingart, U., Horn, D., Venter, J.C., Mandel-Gutfreund, Y., Béjà, O.
ISME J 2007 Volume 1 Issue 6 Pages 492-501
2007
Correcting BLAST e-values for low-complexity segments
Sharon, I., Birkland, A., Chang, K., El-Yaniv, R., Yona, G.
J Comput Biol 2006 Volume 12 Issue 7 Pages 978-1001
2006