Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT
Personalized gut mucosal colonization resistance to empiric probiotics is associated with unique host and microbiome features
RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria.
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.
Environ Microbiol. 2016 Volume 18 Issue 1 Pages 159-173
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Nat Commun 2016 Issue 13219 (2016)
Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants.
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.
Gut bacteria are rarely shared by cohospitalized premature infants, regardless of necrotizing enterocolitis development
eLife 2015 Volume 4 Pages e05477
Unusual biology across a group comprising more than 15% of domain Bacteria
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
Genome Res 2015 Volume 25 Pages 534-543
CRISPR immunity drives rapid phage genome evolution.
mBio 2015 Volume 6 Issue 2 Pages e00262-15
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
ISME J 2014 Volume 8 Issue 7 Pages 1452-1463
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
Microbiome 2014 Volume 2 Issue 1
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
Genome Res 2013 Volume 23 Issue 1 Pages 111-120
Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life
Microbiome 2013 Volume 1 Issue 30
Perspective: Genomes from metagenomics
Science 2013 Volume 342 Issue 6162 Pages 1057-1058
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla
mBio 2013 Volume 4 Issue 5 Pages e00708-13
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
eLife 2013 Volume 2 Pages e01102
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
Microbiome 2013 Volume 1 Issue 22
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
ISME J 2012 Volume 7 Issue 4 Pages 800-816
Fermentation, Hydrogen and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
Science 2012 Volume 337 Issue 6102 Pages 1661-1665
Microbial rhodopsins on leaf surfaces of terrestrial plants
Environ Microbiol 2011 Volume 14 Issue 1 Pages 140-146
Reconstructing a puzzle: Existence of cyanophages containing both photosystem-I & photosystem- II gene-suites inferred from oceanic metagenomic datasets
Environ Microbiol. 2011 Volume 13 Pages 24-32